Change Log

All notable changes to this project will be documented in this CHANGELOG.md file. The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased Changes

  • None.

[0.9.0] - 2024-10-21

Added

  • Initial package release.

[0.9.1] - 2024-10-30

Added

  • Better error message for read_ensembl_gtf() function that now points user to vignette for help when trying to read unsuported file types.

  • Added kaleido as a dependency to allow users to images as multiple formats without having to install new packages.

  • Improved code documentation, corrected spelling errors on vignettes, added two new vignettes.

[0.9.2] - 2024-11-04

Added

  • Increased efficiency of to_intron().

[0.9.3] - 2024-11-07

Added

  • Nothing… Just needed a new release to sync with Zotero for administrative reasons

[0.9.4] - 2024-11-12

Added

  • Changed intron coordinates to be consistent with GTF format (1-index based, inclusive on both sides)

  • Changed make traces function to make sure introns and exon/CDS “touch” in the plot even though their GTF coordinates do not touch.

[0.9.5] - 2024-11-19

Removed

  • Kaleido dependency. Kaleido now requires chrome/chromium to be installed which could complicate the installation.

[1.0.1] - 2025-02-10

Added

  • Changed make_traces() function to avoid transparent dots on the legend.

  • Improved documentation for read_ensembl_gtf() function.

  • Improved documentation for read_expression_matrix() function.

  • Improved formatting on the vignettes.

  • Improved README.md file.