RNApysoforms documentation
===========================

Welcome to the documentation for the RNApysoforms package. Below are the key functions included in this library.


Functions Overview
====================

.. autosummary::
   :toctree: _autosummary
   :recursive:
   :caption: Functions:

   RNApysoforms.calculate_exon_number
   RNApysoforms.gene_filtering
   RNApysoforms.make_plot
   RNApysoforms.make_traces
   RNApysoforms.read_expression_matrix
   RNApysoforms.read_ensembl_gtf
   RNApysoforms.shorten_gaps
   RNApysoforms.to_intron


.. toctree::
   :maxdepth: 1
   :caption: Vignettes:

   examples/basic_usage  
   examples/rescaled_introns
   examples/expression_plot
   examples/expression_plot_with_metadata
   examples/expression_plot_filtered_and_ordered
   examples/plot_specific_transcripts
   examples/custom_color_palettes
   examples/custom_color_maps
   examples/separate_CDS_interactivity
   examples/autoscale_plots
   examples/dealing_with_different_gtf_files
   examples/making_expression_plot_only
   examples/making_changes_to_figure_after_rendering
   examples/making_violin_expression_plots
   examples/using_transcript_name_instead_of_transcript_id
   examples/saving_plots

.. toctree::
   :maxdepth: 1
   :caption: Changelog:

   changelog