RNApysoforms
Functions:
RNApysoforms.calculate_exon_number
RNApysoforms.gene_filtering
RNApysoforms.make_plot
RNApysoforms.make_traces
RNApysoforms.read_expression_matrix
RNApysoforms.read_ensembl_gtf
RNApysoforms.shorten_gaps
RNApysoforms.to_intron
Vignettes:
01: Basic usage (quick start)
02: Rescaled introns
02: Expression plot
03: Expression plot with metadata
04: Expression plot normalized, filtered, and ordered
05: Plot specific transcripts
06: Use custom color palette for plotting
07: Use consistent color maps for making your plots
08: Separate CDS interactivity
09: Auto rescale plots
10: Dealing with non-ENSEMBL GTF files
11: Making expression plot only
12: Making custom ajustments to figure
13. Violin expression plot
Using transcript_name instead of transcript_id
Saving plots
Changelog:
Change Log
RNApysoforms
Index
Index
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C
calculate_exon_number() (in module RNApysoforms)
G
gene_filtering() (in module RNApysoforms)
,
[1]
M
make_plot() (in module RNApysoforms)
make_traces() (in module RNApysoforms)
,
[1]
R
read_ensembl_gtf() (in module RNApysoforms)
read_expression_matrix() (in module RNApysoforms)
S
shorten_gaps() (in module RNApysoforms)
,
[1]
T
to_intron() (in module RNApysoforms)
,
[1]