RNApysoforms

Functions:

  • RNApysoforms.calculate_exon_number
  • RNApysoforms.gene_filtering
  • RNApysoforms.make_plot
  • RNApysoforms.make_traces
  • RNApysoforms.read_expression_matrix
  • RNApysoforms.read_ensembl_gtf
  • RNApysoforms.shorten_gaps
  • RNApysoforms.to_intron

Vignettes:

  • 01: Basic usage (quick start)
  • 02: Rescaled intros
  • 02: Expression plot
  • 03: Expression plot with metadata
  • 04: Expression plot normalized, filtered, and ordered
  • 05: Plot specific transcripts
  • 06: Use custom color palette for plotting
  • 07: Use consistent color maps for making your plots
  • 08: Separate CDS interactivity
  • 09: Auto rescale plots
  • 10: Dealing with non-ENSEMBL GTF files
  • 11: Making expression plot only
  • 12: Making custom ajustments to figure

Changelog:

  • Change Log
RNApysoforms
  • Overview: module code

All modules for which code is available

  • RNApysoforms.calculate_exon_number
  • RNApysoforms.gene_filtering
  • RNApysoforms.make_plot
  • RNApysoforms.make_traces
  • RNApysoforms.read_ensembl_gtf
  • RNApysoforms.read_expression_matrix
  • RNApysoforms.shorten_gaps
  • RNApysoforms.to_intron

© Copyright 2024, Bernardo Aguzzoli Heberle.

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