RNApysoforms

Functions:

  • RNApysoforms.calculate_exon_number
  • RNApysoforms.gene_filtering
  • RNApysoforms.make_plot
  • RNApysoforms.make_traces
  • RNApysoforms.process_ensembl_gtf
  • RNApysoforms.process_expression_matrix
  • RNApysoforms.read_expression_matrix
  • RNApysoforms.read_ensembl_gtf
  • RNApysoforms.shorten_gaps
  • RNApysoforms.to_intron

Vignettes:

  • Basic usage (quick start)
  • Rescaled introns
  • Expression plot
  • Expression plot with metadata
  • Expression plot normalized, filtered, and ordered
  • Plot specific transcripts
  • Use custom color palette for plotting
  • Use consistent color maps for making your plots
  • Separate CDS interactivity
  • Auto rescale plots
  • Dealing with non-ENSEMBL GTF files
  • Making expression plot only
  • Making custom ajustments to figure
  • Violin expression plot
  • Using transcript_name instead of transcript_id
  • Saving plots
  • Annotate RNA modification sites of interest or other single nucleotide sites of interest

Changelog:

  • Change Log
RNApysoforms
  • Index

Index

C | G | M | P | R | S | T

C

  • calculate_exon_number() (in module RNApysoforms)

G

  • gene_filtering() (in module RNApysoforms), [1]

M

  • make_plot() (in module RNApysoforms)
  • make_traces() (in module RNApysoforms), [1]

P

  • process_ensembl_gtf() (in module RNApysoforms)
  • process_expression_matrix() (in module RNApysoforms)

R

  • read_ensembl_gtf() (in module RNApysoforms)
  • read_expression_matrix() (in module RNApysoforms)

S

  • shorten_gaps() (in module RNApysoforms), [1]

T

  • to_intron() (in module RNApysoforms), [1]

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